| Name | Version | Summary | date |
| multiqc |
1.32 |
Create aggregate bioinformatics analysis reports across many samples and tools |
2025-10-25 23:36:48 |
| multiqc-xenium-extra |
1.0.1 |
MultiQC plugin for extra Xenium spatial transcriptomics analysis |
2025-10-25 22:17:27 |
| ncbi-tree |
1.1.0 |
ncbi-tree is an open source, cross-platform command-line tool for downloading the latest NCBI taxonomy database and converting it to Newick tree format (.tre), with optional plain-text visualization (.txt) |
2025-10-25 18:16:53 |
| denario |
0.1.24 |
Modular Automation of Scientific Research with Multi-Agent Systems |
2025-10-21 00:06:49 |
| freeflux |
0.3.7 |
FreeFlux is a package for 13C metabolic flux analysis |
2025-10-19 04:50:00 |
| byotrack |
1.4.1 |
Biological particle tracking with Python |
2025-10-16 14:14:46 |
| nestling-growth-app |
0.1.10 |
An interactive Dash app to analyze nestling growth using biological models |
2025-10-15 15:40:16 |
| gilda-slim |
1.4.1.1 |
Grounding for biomedical entities with contextual disambiguation |
2025-10-13 11:21:55 |
| cogent3-h5seqs |
0.7.1 |
HDF5 storage driver for cogent3 sequence collections |
2025-10-10 05:46:35 |
| samcell |
1.2.0 |
Generalized label-free biological cell segmentation with Segment Anything |
2025-10-09 23:46:35 |
| sinetra |
0.1.5 |
Generate synthetic data for biological particle tracking |
2025-10-08 09:38:52 |
| simble |
0.0.2 |
Simble is a simulation tool for B cell receptor (BCR) somatic hypermutation (SHM) and affinity maturation. Simble models B cells in the germinal center and their differentiation and migration to other tissues. |
2025-10-06 13:50:41 |
| biology-files |
0.2.14 |
Save and load common biology file formats |
2025-09-13 17:35:46 |
| gemsembler |
0.11.8 |
A tool for assembling and comparing several types of Genome-Scale Metabolic Models. |
2025-09-04 13:22:45 |
| bioxai |
0.0.2 |
BioX: A foundation for reproducible bioinformatics tooling |
2025-08-27 16:18:02 |
| yunta |
0.0.6.post1 |
Predicting protein-protein interactions and structures from multiple sequence alignments. |
2025-08-27 09:56:41 |
| multiqc-vlad |
1.30.dev20250821143134 |
Create aggregate bioinformatics analysis reports across many samples and tools |
2025-08-21 12:42:01 |
| just-agents-core |
0.8.3 |
Just Agents - Base Package |
2025-08-15 02:09:34 |
| CellProfiler-nightly |
5.0.0.dev265 |
CellProfiler is a free open-source software designed to enable biologists without training in computer vision or programming to quantitatively measure phenotypes from thousands of images automatically. |
2025-08-12 19:09:01 |
| cellprofiler-core-nightly |
5.0.0.dev265 |
cellprofiler-core implements the bulk of CellProfiler's non-gui functionality |
2025-08-12 19:08:43 |